Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cfap298Cilia and flagella associated protein 298. (290 aa)    
Predicted Functional Partners:
dnaaf4
CS domain-containing protein.
      
 0.776
cfap300
Cilia and flagella associated protein 300.
    
 
 0.768
LOC101078372
General transcription factor IIA, 1-like.
      
 0.721
LOC101067238
Uncharacterized protein.
      
 0.713
ENSTRUP00000086285
annotation not available
      
 0.706
ccdc151
Coiled-coil domain containing 151.
      
 0.667
dnaaf3
Dynein, axonemal, assembly factor 3 like.
      
 0.660
usp16
Ubiquitin carboxyl-terminal hydrolase 16; Specifically deubiquitinates 'Lys-120' of histone H2A (H2AK119Ub), a specific tag for epigenetic transcriptional repression, thereby acting as a coactivator. Deubiquitination of histone H2A is a prerequisite for subsequent phosphorylation at 'Ser-11' of histone H3 (H3S10ph), and is required for chromosome segregation when cells enter into mitosis. Regulates Hox gene expression via histone H2A deubiquitination. Prefers nucleosomal substrates. Does not deubiquitinate histone H2B.
      
 0.654
wdr92
WD repeat domain 92.
  
   
 0.649
dnai1
Dynein, axonemal, intermediate chain 1, paralog 2.
   
  
 0.631
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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