Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
magi1Membrane associated guanylate kinase, WW and PDZ domain containing 1b. (1694 aa)    
Predicted Functional Partners:
H2RZ11_TAKRU
Ig-like domain-containing protein.
   
 0.958
synpo
Uncharacterized protein.
     
 0.923
LOC101075286
Actinin, alpha 1.
    
 0.921
ACTN4
Actinin alpha 4.
    
 0.921
H2U666_TAKRU
Uncharacterized protein.
  
  
 
0.901
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 
 0.749
PTPN14
Tyrosine-protein phosphatase non-receptor type 14 isoform X1.
    
 
 0.688
atxn7
Ataxin 7.
      
 0.682
prickle2
Prickle homolog 2b.
    
 
 0.673
LOC101065543
Solute carrier family 2 member 9, like 1.
      
 0.669
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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