Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpl31Ribosomal protein L31. (127 aa)    
Predicted Functional Partners:
rpl27
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
   
 0.999
rpl35a
Ribosomal protein L35a.
   
 0.999
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.999
rpl21
Ribosomal protein L21.
  
 0.999
H2TER7_TAKRU
Ribosomal protein S28.
   
 
 0.999
Rpl39
Ribosomal protein L39.
   
 0.999
rps27a
Ribosomal protein S27a.
   
 0.999
RPS29
Ribosomal protein S29.
   
 
 0.999
rpl4
Ribosomal protein L4.
   
 0.999
rpl6
Ribosomal protein L6.
   
 0.999
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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