STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aup1AUP1 lipid droplet regulating VLDL assembly factor. (411 aa)    
Predicted Functional Partners:
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
   
 
 0.986
ube2j1
Ubiquitin-conjugating enzyme E2, J1.
   
 
 0.890
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 
 0.874
faf2
Fas associated factor family member 2.
    
 
 0.871
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.855
amfr
Autocrine motility factor receptor b.
    
 
 0.855
poll
Polymerase (DNA directed), lambda; Belongs to the DNA polymerase type-X family.
      
 0.789
LOC101062700
Protein tyrosine phosphatase 4A2b.
    
 
 0.746
ptp4a1
Protein tyrosine phosphatase 4A1.
    
 
 0.746
dqx1
DEAQ box RNA-dependent ATPase 1.
 
    
 0.739
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.