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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aup1AUP1 lipid droplet regulating VLDL assembly factor. (411 aa)    
Predicted Functional Partners:
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
   
 
 0.813
poll
Polymerase (DNA directed), lambda; Belongs to the DNA polymerase type-X family.
      
 0.690
faf2
Fas associated factor family member 2.
    
 
 0.681
dqx1
DEAQ box RNA-dependent ATPase 1.
 
    
 0.659
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 
 0.656
derl2
Derlin-2/3.
   
  
 0.653
ube2j1
Ubiquitin-conjugating enzyme E2, J1.
    
 
 0.637
LOC101079283
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
   
 
 0.630
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.602
amfr
Autocrine motility factor receptor b.
    
 
 0.602
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.