Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cherpCalcium homeostasis endoplasmic reticulum protein. (928 aa)    
Predicted Functional Partners:
u2surp
U2 snRNP-associated SURP domain containing.
   
 0.999
rbm17
RNA binding motif protein 17.
   
 0.998
sf3a2
Splicing factor 3a, subunit 2.
   
 0.990
phf5a
PHD finger protein 5A.
   
 0.983
sf3b4
Splicing factor 3b, subunit 4.
   
 0.958
DHX15
DEAH-box helicase 15.
   
 0.956
ENSTRUP00000084024
annotation not available
   
 0.956
sf3a1
Splicing factor 3a, subunit 1.
   
 0.951
H2SWV4_TAKRU
RRM domain-containing protein.
   
 
 0.911
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.911
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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