LOC101076812 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101076812

Transferrin receptor 1b. (764 aa)

Predicted Functional Partners:

tfr2

0.907

tfrc

0.903

LOC101071352

0.865

meltf

0.702

LOC101077601

0.695

LOC101076070

0.695

slc40a1

0.654

ireb2

0.639

LOC101062303

0.591

optn

0.586

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101062303	LOC101076812	ENSTRUP00000039552	ENSTRUP00000018528	Otolith matrix protein.	Transferrin receptor 1b.	0.591
LOC101062303	tfr2	ENSTRUP00000039552	ENSTRUP00000008628	Otolith matrix protein.	Transferrin receptor 2.	0.591
LOC101062303	tfrc	ENSTRUP00000039552	ENSTRUP00000004738	Otolith matrix protein.	Transferrin receptor 1a.	0.591
LOC101071352	LOC101076812	ENSTRUP00000056709	ENSTRUP00000018528	Erythropoietin receptor.	Transferrin receptor 1b.	0.865
LOC101071352	tfr2	ENSTRUP00000056709	ENSTRUP00000008628	Erythropoietin receptor.	Transferrin receptor 2.	0.865
LOC101071352	tfrc	ENSTRUP00000056709	ENSTRUP00000004738	Erythropoietin receptor.	Transferrin receptor 1a.	0.865
LOC101076070	LOC101076812	ENSTRUP00000038895	ENSTRUP00000018528	Serotransferrin; Transferrins are iron binding transport proteins which bind Fe(3+) ion in association with the binding of an anion, usually bicarbonate.	Transferrin receptor 1b.	0.695
LOC101076070	tfr2	ENSTRUP00000038895	ENSTRUP00000008628	Serotransferrin; Transferrins are iron binding transport proteins which bind Fe(3+) ion in association with the binding of an anion, usually bicarbonate.	Transferrin receptor 2.	0.695
LOC101076070	tfrc	ENSTRUP00000038895	ENSTRUP00000004738	Serotransferrin; Transferrins are iron binding transport proteins which bind Fe(3+) ion in association with the binding of an anion, usually bicarbonate.	Transferrin receptor 1a.	0.695
LOC101076812	LOC101062303	ENSTRUP00000018528	ENSTRUP00000039552	Transferrin receptor 1b.	Otolith matrix protein.	0.591
LOC101076812	LOC101071352	ENSTRUP00000018528	ENSTRUP00000056709	Transferrin receptor 1b.	Erythropoietin receptor.	0.865
LOC101076812	LOC101076070	ENSTRUP00000018528	ENSTRUP00000038895	Transferrin receptor 1b.	Serotransferrin; Transferrins are iron binding transport proteins which bind Fe(3+) ion in association with the binding of an anion, usually bicarbonate.	0.695
LOC101076812	LOC101077601	ENSTRUP00000018528	ENSTRUP00000013198	Transferrin receptor 1b.	Serotransferrin; Transferrins are iron binding transport proteins which bind Fe(3+) ion in association with the binding of an anion, usually bicarbonate.	0.695
LOC101076812	ireb2	ENSTRUP00000018528	ENSTRUP00000040661	Transferrin receptor 1b.	Iron-responsive element binding protein 2; Belongs to the aconitase/IPM isomerase family.	0.639
LOC101076812	meltf	ENSTRUP00000018528	ENSTRUP00000046989	Transferrin receptor 1b.	Serotransferrin; Transferrins are iron binding transport proteins which bind Fe(3+) ion in association with the binding of an anion, usually bicarbonate.	0.702
LOC101076812	optn	ENSTRUP00000018528	ENSTRUP00000026229	Transferrin receptor 1b.	Optineurin.	0.586
LOC101076812	slc40a1	ENSTRUP00000018528	ENSTRUP00000026840	Transferrin receptor 1b.	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	0.654
LOC101076812	tfr2	ENSTRUP00000018528	ENSTRUP00000008628	Transferrin receptor 1b.	Transferrin receptor 2.	0.907
LOC101076812	tfrc	ENSTRUP00000018528	ENSTRUP00000004738	Transferrin receptor 1b.	Transferrin receptor 1a.	0.903
LOC101077601	LOC101076812	ENSTRUP00000013198	ENSTRUP00000018528	Serotransferrin; Transferrins are iron binding transport proteins which bind Fe(3+) ion in association with the binding of an anion, usually bicarbonate.	Transferrin receptor 1b.	0.695