Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPNE8Copine 8. (564 aa)    
Predicted Functional Partners:
sergef
Secretion regulating guanine nucleotide exchange factor.
   
  
 0.777
fibin
Fin bud initiation factor b.
      
 0.772
LOC101065208
Usher syndrome 1C.
      
 0.733
zfc3h1
zf-C3H1 domain-containing protein.
      
 0.706
tbc1d15
TBC1 domain family, member 15.
      
 0.677
LOC101075903
Fin bud initiation factor a.
      
 0.669
tspan8
Tetraspanin.
      
 0.662
znf536
Zinc finger protein 536.
      
 0.651
LOC101064546
AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.
      
 0.595
lgr5
Leucine-rich repeat-containing G protein-coupled receptor 5.
     
 0.568
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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