STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPNE8Copine 8. (564 aa)    
Predicted Functional Partners:
tbc1d15
TBC1 domain family, member 15.
      
 0.706
LOC101065208
Usher syndrome 1C.
      
 0.688
zfc3h1
zf-C3H1 domain-containing protein.
      
 0.667
fibin
Fin bud initiation factor b.
      
 0.652
LOC101064546
AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.
      
 0.634
sergef
Secretion regulating guanine nucleotide exchange factor.
   
  
 0.632
tspan8
Tetraspanin.
      
 0.610
LOC101075903
Fin bud initiation factor a.
      
 0.579
znf536
Zinc finger protein 536.
      
 0.568
rnaseh2b
Ribonuclease H2, subunit B.
   
 
 0.543
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.