Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl45Mitochondrial ribosomal protein L45. (351 aa)    
Predicted Functional Partners:
mrpl15
Mitochondrial ribosomal protein L15.
   
   0.973
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.964
MRPL49
Mitochondrial ribosomal protein L49.
   
 
 0.963
mrpl4
Mitochondrial ribosomal protein L4.
   
 
 0.963
mrpl39
Mitochondrial ribosomal protein L39.
   
 
 0.960
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.959
mrps30
Mitochondrial ribosomal protein S30.
   
 
 0.957
mrpl48
Mitochondrial ribosomal protein L48.
   
 
 0.956
mrpl22
Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.951
mrpl52
Mitochondrial ribosomal protein L52.
   
 
 0.951
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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