Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
angptl6Angiopoietin-like 6. (483 aa)    
Predicted Functional Partners:
tie1
Tyrosine kinase with immunoglobulin-like and EGF-like domains 1.
   
 0.668
LOC101065024
Angiopoietin-like 1b.
  
  
0.572
fgg
Fibrinogen gamma chain.
  
  
 
0.565
LOC115246553
Angiopoietin-related protein 5-like.
  
  
 
0.562
fgl1
Fibrinogen C-terminal domain-containing protein.
  
  
 
0.561
MFAP4
Microfibril associated protein 4.
  
  
 
0.554
angptl1
Angiopoietin-like 1a.
  
  
 
0.553
fgb
Fibrinogen beta chain.
     
 
0.540
LOC101072052
Si:ch211-203k16.3.
     
 
0.540
srm
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
      
 0.540
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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