Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
eva1cEva-1 homolog C (C. elegans). (440 aa)    
Predicted Functional Partners:
pofut2
Protein O-fucosyltransferase 2.
      
 0.651
donson
Uncharacterized protein.
      
 0.507
rwdd2b
RWD domain containing 2B.
      
 0.507
urb1
URB1 ribosome biogenesis homolog.
      
 0.497
ybey
YbeY metalloendoribonuclease.
      
 0.480
LOC101067372
Pyridoxal (pyridoxine, vitamin B6) kinase a.
      
 0.477
LOC101069818
Pyridoxal (pyridoxine, vitamin B6) kinase b.
      
 0.477
LOC105419995
DBF4-type domain-containing protein.
    
   0.454
LOC101061888
Slit homolog 1b (Drosophila).
    
 
 0.435
slit1
Slit homolog 1a (Drosophila).
    
 
 0.435
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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