Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101070223LIM and calponin homology domains 1. (935 aa)    
Predicted Functional Partners:
ENSTRUP00000079806
annotation not available
 
 
    0.902
LOC101066151
Contactin 4.
   
  
 0.706
setdb1
SET domain bifurcated histone lysine methyltransferase 1b.
      
 0.667
phox2b
Paired like homeobox 2B.
      
 0.630
thyn1
Thymocyte nuclear protein 1.
      
 0.542
huwe1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
    
   0.536
PLEKHG1
Pleckstrin homology and RhoGEF domain containing G1.
      
 0.439
dvl3
Dishevelled segment polarity protein 3a.
    
 0.427
dvl2
Dishevelled segment polarity protein 2.
    
 0.427
ENSTRUP00000057963
annotation not available
    
 0.427
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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