Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
unc13dUnc-13 homolog D (C. elegans). (1107 aa)    
Predicted Functional Partners:
LOC101080086
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
      
 0.589
LOC101067730
Uncharacterized protein.
    
 
 0.551
rab27a
RAB27A, member RAS oncogene family.
    
 
 0.551
LOC101071476
RAB27B, member RAS oncogene family.
    
 
 0.551
LOC101066339
Eomesodermin homolog b.
      
 0.515
SLC22A17
Solute carrier family 22 member 17.
      
 0.486
SLC66A2
Solute carrier family 66 member 2.
      
 0.486
lcp1
Uncharacterized protein.
      
 0.486
crlf3
Cytokine receptor-like factor 3.
      
 0.476
LOC101074750
Serine/threonine protein kinase 26.
      
 0.475
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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