mab21l2 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mab21l2

Mab-21-like 2. (359 aa)

Predicted Functional Partners:

fam222a

0.753

pdyn

0.705

LOC101079837

0.702

maml2

0.641

meis1

0.615

meis2

0.615

ENSTRUP00000053633

0.611

ENSTRUP00000069026

0.583

thrsp

0.551

LOC115250409

0.549

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000053633	LOC101079837	ENSTRUP00000053633	ENSTRUP00000062409	Mastermind-like protein 3.	Angiomotin.	0.637
ENSTRUP00000053633	LOC115250409	ENSTRUP00000053633	ENSTRUP00000052609	Mastermind-like protein 3.	Protein S100; Belongs to the S-100 family.	0.495
ENSTRUP00000053633	mab21l2	ENSTRUP00000053633	ENSTRUP00000018778	Mastermind-like protein 3.	Mab-21-like 2.	0.611
ENSTRUP00000053633	pdyn	ENSTRUP00000053633	ENSTRUP00000030810	Mastermind-like protein 3.	Prodynorphin.	0.717
ENSTRUP00000069026	mab21l2	ENSTRUP00000069026	ENSTRUP00000018778	Teashirt zinc finger homeobox 2.	Mab-21-like 2.	0.583
ENSTRUP00000069026	meis1	ENSTRUP00000069026	ENSTRUP00000070382	Teashirt zinc finger homeobox 2.	Meis homeobox 1 b.	0.700
ENSTRUP00000069026	meis2	ENSTRUP00000069026	ENSTRUP00000087309	Teashirt zinc finger homeobox 2.	Meis homeobox 2a.	0.700
LOC101079837	ENSTRUP00000053633	ENSTRUP00000062409	ENSTRUP00000053633	Angiomotin.	Mastermind-like protein 3.	0.637
LOC101079837	LOC115250409	ENSTRUP00000062409	ENSTRUP00000052609	Angiomotin.	Protein S100; Belongs to the S-100 family.	0.705
LOC101079837	mab21l2	ENSTRUP00000062409	ENSTRUP00000018778	Angiomotin.	Mab-21-like 2.	0.702
LOC101079837	maml2	ENSTRUP00000062409	ENSTRUP00000067079	Angiomotin.	MamL-1 domain-containing protein.	0.732
LOC101079837	pdyn	ENSTRUP00000062409	ENSTRUP00000030810	Angiomotin.	Prodynorphin.	0.891
LOC115250409	ENSTRUP00000053633	ENSTRUP00000052609	ENSTRUP00000053633	Protein S100; Belongs to the S-100 family.	Mastermind-like protein 3.	0.495
LOC115250409	LOC101079837	ENSTRUP00000052609	ENSTRUP00000062409	Protein S100; Belongs to the S-100 family.	Angiomotin.	0.705
LOC115250409	mab21l2	ENSTRUP00000052609	ENSTRUP00000018778	Protein S100; Belongs to the S-100 family.	Mab-21-like 2.	0.549
LOC115250409	maml2	ENSTRUP00000052609	ENSTRUP00000067079	Protein S100; Belongs to the S-100 family.	MamL-1 domain-containing protein.	0.531
LOC115250409	pdyn	ENSTRUP00000052609	ENSTRUP00000030810	Protein S100; Belongs to the S-100 family.	Prodynorphin.	0.701
fam222a	mab21l2	ENSTRUP00000038619	ENSTRUP00000018778	Family with sequence similarity 222 member A.	Mab-21-like 2.	0.753
fam222a	meis1	ENSTRUP00000038619	ENSTRUP00000070382	Family with sequence similarity 222 member A.	Meis homeobox 1 b.	0.753
fam222a	meis2	ENSTRUP00000038619	ENSTRUP00000087309	Family with sequence similarity 222 member A.	Meis homeobox 2a.	0.753