STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
grnGranulin b. (669 aa)    
Predicted Functional Partners:
cs
Citrate synthase; Belongs to the citrate synthase family.
   
   0.573
drg1
Developmentally regulated GTP binding protein 1.
    
   0.563
pole2
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.
    
   0.563
ENSTRUP00000047990
Uncharacterized protein.
    
   0.563
c9hxorf56
UPF0428 protein CXorf56 homolog.
    
   0.563
ctsz
Cathepsin Z; Belongs to the peptidase C1 family.
   
 0.517
ENSTRUP00000066846
annotation not available
   
 0.517
drg2
Developmentally regulated GTP binding protein 2.
    
   0.508
LOC101075977
Cathepsin F; Belongs to the peptidase C1 family.
   
 0.493
ctso
Cathepsin O; Belongs to the peptidase C1 family.
   
 0.492
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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