Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cnnm1Uncharacterized protein. (893 aa)    
Predicted Functional Partners:
LOC101062700
Protein tyrosine phosphatase 4A2b.
    
 
 0.656
ptp4a1
Protein tyrosine phosphatase 4A1.
    
 
 0.656
gmps
Guanine monophosphate synthase.
    
 0.601
arl15
ADP-ribosylation factor-like 15a.
   
 
 0.580
atic
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.
    
 0.547
utp18
UTP18 small subunit processome component.
      
 0.513
slc34a2
Solute carrier family 34 member 2b.
     
 0.465
LOC101063778
Protein tyrosine phosphatase 4A2a.
    
 
 0.448
LOC101071475
Cytochrome c oxidase assembly homolog 11 (yeast).
      
 0.443
tyw5
tRNA-yW synthesizing protein 5.
      
 0.435
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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