Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101069176Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (118 aa)    
Predicted Functional Partners:
ENSTRUP00000055606
Uncharacterized protein.
   
  
 0.532
LOC101071091
Glutamine synthetase.
    
 
 0.524
LOC115247848
Glutamine synthetase.
    
 
 0.524
ENSTRUP00000077588
NRIP1_repr_2 domain-containing protein.
      
 0.511
gpr153
G protein-coupled receptor 153.
   
  
 0.480
cct2
Chaperonin containing TCP1, subunit 2 (beta).
      
 0.439
LOC105419420
GLI pathogenesis-related 1a; Belongs to the CRISP family.
   
  
 0.437
ca7
Carbonic anhydrase VII; Belongs to the alpha-carbonic anhydrase family.
   
  
 0.417
LOC101073641
Glutamine synthetase.
    
 
 0.408
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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