Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sra1SRA1 domain-containing protein. (263 aa)    
Predicted Functional Partners:
dcp1a
Decapping mRNA 1A.
      
 0.819
H2V7Q0_TAKRU
SEC24 homolog C, COPII coat complex component.
    
   0.762
sec24d
SEC24 homolog D, COPII coat complex component.
    
   0.753
pus1
Pseudouridine synthase 1.
      
 0.722
ube2t
Ubiquitin-conjugating enzyme E2T (putative).
    
   0.625
eprs1
Glutamyl-prolyl-tRNA synthetase.
    
   0.601
ENSTRUP00000028853
annotation not available
      
 0.598
slirp
SRA stem-loop interacting RNA binding protein.
    
 
 0.598
TMEM245
Uncharacterized protein.
      
 0.598
ncoa1
Nuclear receptor coactivator 1.
      
 0.572
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (28%) [HD]