STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpb2Carboxypeptidase B2 (plasma). (429 aa)    
Predicted Functional Partners:
LOC101072468
XK-related protein.
      
 0.809
alg11
ALG11 alpha-1,2-mannosyltransferase.
   
  
 0.732
rpl31
Ribosomal protein L31.
      
 0.721
agt
Angiotensinogen; Belongs to the serpin family.
   
 
 0.715
usp40
Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family.
    
 
 0.711
chst10
Carbohydrate sulfotransferase.
      
 0.705
cpn1
Carboxypeptidase N, polypeptide 1.
   
 
 0.646
serpind1
Serpin peptidase inhibitor, clade D (heparin cofactor), member 1; Belongs to the serpin family.
   
 
 0.630
serpinc1
Serpin peptidase inhibitor, clade C (antithrombin), member 1; Belongs to the serpin family.
   
 
 0.597
LOC101077181
ArfGAP with GTPase domain, ankyrin repeat and PH domain 1.
      
 0.591
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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