STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hmgxb4HMG box domain containing 4a. (564 aa)    
Predicted Functional Partners:
mcf2
MCF.2 cell line derived transforming sequence a.
      
 0.883
c15h17orf49
Zgc:103508.
    
 
 0.864
bptf
Bromodomain PHD finger transcription factor.
    
   0.854
LOC101078073
Bromodomain PHD finger transcription factor.
    
   0.854
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
    
 
 0.774
ankrd54
FAD-dependent oxidoreductase domain containing 2.
      
 0.741
trip12
Thyroid hormone receptor interactor 12.
    
 
 0.726
mcm5
DNA helicase; Belongs to the MCM family.
      
 0.703
LOC101077873
MCF.2 cell line derived transforming sequence b.
      
 0.696
ncor2
Nuclear receptor corepressor 2.
    
   0.690
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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