Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101078267Uncharacterized protein. (847 aa)    
Predicted Functional Partners:
nedd9
Neural precursor cell expressed, developmentally down-regulated 9.
    
 0.700
efs
Embryonal Fyn-associated substrate.
    
 0.608
kcne4
Potassium voltage-gated channel, Isk-related family, member 4.
     
 0.533
LOC101075118
Laminin, beta 2-like.
    
 0.436
LOC101073201
TUB like protein 4b; Belongs to the TUB family.
     
 0.429
tulp4
TUB like protein 4a; Belongs to the TUB family.
     
 0.429
LOC101061845
NME/NM23 family member 8; Belongs to the NDK family.
   
 0.401
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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