Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
syn1Synapsin I. (624 aa)    
Predicted Functional Partners:
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.726
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 
 0.710
LOC101079537
Synaptotagmin Ia.
   
 0.644
LOC101077791
Uncharacterized protein.
    
 
 0.639
cask
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
   
 0.638
stxbp2
Syntaxin binding protein 2; Belongs to the STXBP/unc-18/SEC1 family.
   
 
 0.580
LOC101066073
Syntaxin binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family.
   
 
 0.580
LOC101061698
Syntaxin-binding protein 1-like.
   
 
 0.580
LOC101070768
Uncharacterized protein.
   
 0.555
LOC101076610
RAB3A, member RAS oncogene family.
   
 0.555
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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