Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
abhd10Transgelin 3b. (290 aa)    
Predicted Functional Partners:
LOC101066156
Uncharacterized protein.
    
   0.796
kcmf1
Potassium channel modulatory factor 1.
    
   0.796
ubr4
Uncharacterized protein.
    
   0.786
LOC101072270
General transcription factor IIIAa.
   
 
 0.701
nt5dc1
5'-nucleotidase domain containing 1.
      
 0.697
gtf3a
General transcription factor IIIA, b.
   
 
 0.693
gsx1
Homeobox protein GSH.
      
 0.656
zdhhc24
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
   
  
 0.649
zdhhc22
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
   
  
 0.649
tmem209
Transmembrane protein 209.
      
 0.636
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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