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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdca8Cell division cycle associated 8. (257 aa)    
Predicted Functional Partners:
incenp
Uncharacterized protein.
   
 0.998
LOC101062741
Baculoviral IAP repeat containing 5a.
   
 0.998
atp5f1a
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 0.996
atp5pb
ATP synthase peripheral stalk-membrane subunit b.
   
 0.994
atp5pd
ATP synthase peripheral stalk subunit d.
   
 0.994
LOC101064682
Baculoviral IAP repeat containing 5b.
   
 0.993
atp5po
ATP synthase peripheral stalk subunit OSCP.
  
 0.993
atp5f1c
ATP synthase subunit gamma.
  
 0.992
atp5f1d
ATP synthase F1 subunit delta.
  
 0.991
bub1b
BUB1 mitotic checkpoint serine/threonine kinase Bb.
   
 
 0.976
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.