STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101077494Zgc:154093. (320 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
      
 0.641
LOC101075068
Si:ch211-150o23.3.
  
     0.481
LOC105416413
CDC42 effector protein (Rho GTPase binding) 1b.
     
0.466
LOC101073130
CDC42 effector protein (Rho GTPase binding) 4a.
     
 0.466
LOC101064527
CDC42 effector protein (Rho GTPase binding) 4b.
     
 0.466
cdc42ep5
CDC42 effector protein (Rho GTPase binding) 5.
     
 0.466
LOC101076901
Transmembrane protein 51b.
      
 0.433
LOC101063717
Transmembrane protein 51a.
      
 0.433
LOC101076722
IQ motif containing GTPase activating protein 3.
     
 0.401
iqgap2
IQ motif containing GTPase activating protein 2.
     
 0.401
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.