Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101062929Uncharacterized protein. (240 aa)    
Predicted Functional Partners:
pacrg
PARK2 co-regulated.
  
 
 0.850
LOC101074513
EF-hand domain (C-terminal) containing 1.
  
 
 0.830
H2TWS9_TAKRU
Uncharacterized protein.
  
 
 0.819
dnai1
Dynein, axonemal, intermediate chain 1, paralog 2.
   
 
 0.813
cfap52
Cilia and flagella associated protein 52.
  
 
 0.807
dnai2
Dynein, axonemal, intermediate chain 2b.
   
 
 0.806
ttc25
Tetratricopeptide repeat domain 25.
   
 
 0.769
rsph9
Radial spoke head 9 homolog.
  
 
 0.766
tekt2
Tektin 2 (testicular).
   
 
 0.765
tctex1d2
Uncharacterized protein.
   
 
 0.753
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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