STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prpf40aPRP40 pre-mRNA processing factor 40 homolog A. (852 aa)    
Predicted Functional Partners:
rbm25
RNA binding motif protein 25b.
   
 0.999
sf3a1
Splicing factor 3a, subunit 1.
   
 0.978
u2surp
U2 snRNP-associated SURP domain containing.
   
 
 0.959
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.945
rbm39
RNA binding motif protein 39b.
   
 0.940
ENSTRUP00000056044
Uncharacterized protein.
   
 0.940
htatsf1
HIV-1 Tat specific factor 1.
   
 
 0.939
dnajc8
J domain-containing protein.
   
 
 0.938
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
     
 0.929
ccar1
Cell division cycle and apoptosis regulator 1.
   
  0.924
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.