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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf40aPRP40 pre-mRNA processing factor 40 homolog A. (852 aa)    
Predicted Functional Partners:
rbm25
RNA binding motif protein 25b.
   
 0.947
ccar1
Cell division cycle and apoptosis regulator 1.
   
  0.851
cdk5rap1
CDK5 regulatory subunit associated protein 1.
 
 
   0.842
Sf1
Splicing factor 1.
   
 0.818
u2surp
U2 snRNP-associated SURP domain containing.
   
 
 0.797
tpr
Translocated promoter region b, nuclear basket protein.
   
  0.776
sf3a1
Splicing factor 3a, subunit 1.
   
 
 0.753
xrn2
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
   
  
 0.749
rbm39
RNA binding motif protein 39b.
   
  0.746
ENSTRUP00000056044
Uncharacterized protein.
   
  0.746
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.