Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tyrTyrosinase. (540 aa)    
Predicted Functional Partners:
got2
Aspartate aminotransferase.
    
 0.914
LOC101069631
Melanocyte inducing transcription factor a.
    
 0.914
oca2
Oculocutaneous albinism II.
      
 0.912
il4i1
Activating transcription factor 5b.
    
 0.909
LOC446095
Tyrosine hydroxylase 2.
     
 0.907
th
Tyrosine 3-monooxygenase.
     
 0.907
LOC101072153
Amine oxidase.
   
  0.906
H2RV57_TAKRU
Uncharacterized protein.
    
 0.904
got1
Aspartate aminotransferase.
    
 0.903
ddc
Dopa decarboxylase.
    
 0.902
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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