ythdf3 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ythdf3

YTH N(6)-methyladenosine RNA binding protein 3. (603 aa)

Predicted Functional Partners:

mettl14

0.675

wtap

0.672

zfc3h1

0.658

alkbh5

0.566

mettl3

0.557

cnot8

0.543

LOC101064780

0.543

rbm15

0.528

fto

0.528

Zc3h13

0.528

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101064780	cnot8	ENSTRUP00000052238	ENSTRUP00000000928	CCR4-NOT transcription complex, subunit 7.	CCR4-NOT transcription complex, subunit 8.	0.901
LOC101064780	ythdf3	ENSTRUP00000052238	ENSTRUP00000019571	CCR4-NOT transcription complex, subunit 7.	YTH N(6)-methyladenosine RNA binding protein 3.	0.543
Zc3h13	alkbh5	ENSTRUP00000063950	ENSTRUP00000033938	Uncharacterized protein.	AlkB homolog 5, RNA demethylase.	0.566
Zc3h13	fto	ENSTRUP00000063950	ENSTRUP00000048950	Uncharacterized protein.	FTO alpha-ketoglutarate dependent dioxygenase.	0.557
Zc3h13	mettl14	ENSTRUP00000063950	ENSTRUP00000000938	Uncharacterized protein.	Methyltransferase like 14; Belongs to the MT-A70-like family.	0.712
Zc3h13	mettl3	ENSTRUP00000063950	ENSTRUP00000039267	Uncharacterized protein.	Methyltransferase like 3; Belongs to the MT-A70-like family.	0.706
Zc3h13	rbm15	ENSTRUP00000063950	ENSTRUP00000006813	Uncharacterized protein.	RNA binding motif protein 15.	0.758
Zc3h13	wtap	ENSTRUP00000063950	ENSTRUP00000012984	Uncharacterized protein.	WT1 associated protein.	0.989
Zc3h13	ythdf3	ENSTRUP00000063950	ENSTRUP00000019571	Uncharacterized protein.	YTH N(6)-methyladenosine RNA binding protein 3.	0.528
alkbh5	Zc3h13	ENSTRUP00000033938	ENSTRUP00000063950	AlkB homolog 5, RNA demethylase.	Uncharacterized protein.	0.566
alkbh5	fto	ENSTRUP00000033938	ENSTRUP00000048950	AlkB homolog 5, RNA demethylase.	FTO alpha-ketoglutarate dependent dioxygenase.	0.862
alkbh5	mettl14	ENSTRUP00000033938	ENSTRUP00000000938	AlkB homolog 5, RNA demethylase.	Methyltransferase like 14; Belongs to the MT-A70-like family.	0.671
alkbh5	mettl3	ENSTRUP00000033938	ENSTRUP00000039267	AlkB homolog 5, RNA demethylase.	Methyltransferase like 3; Belongs to the MT-A70-like family.	0.574
alkbh5	rbm15	ENSTRUP00000033938	ENSTRUP00000006813	AlkB homolog 5, RNA demethylase.	RNA binding motif protein 15.	0.566
alkbh5	wtap	ENSTRUP00000033938	ENSTRUP00000012984	AlkB homolog 5, RNA demethylase.	WT1 associated protein.	0.665
alkbh5	ythdf3	ENSTRUP00000033938	ENSTRUP00000019571	AlkB homolog 5, RNA demethylase.	YTH N(6)-methyladenosine RNA binding protein 3.	0.566
cnot8	LOC101064780	ENSTRUP00000000928	ENSTRUP00000052238	CCR4-NOT transcription complex, subunit 8.	CCR4-NOT transcription complex, subunit 7.	0.901
cnot8	ythdf3	ENSTRUP00000000928	ENSTRUP00000019571	CCR4-NOT transcription complex, subunit 8.	YTH N(6)-methyladenosine RNA binding protein 3.	0.543
fto	Zc3h13	ENSTRUP00000048950	ENSTRUP00000063950	FTO alpha-ketoglutarate dependent dioxygenase.	Uncharacterized protein.	0.557
fto	alkbh5	ENSTRUP00000048950	ENSTRUP00000033938	FTO alpha-ketoglutarate dependent dioxygenase.	AlkB homolog 5, RNA demethylase.	0.862