STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cd40CD40. (307 aa)    
Predicted Functional Partners:
LOC101068020
CD40 ligand; Belongs to the tumor necrosis factor family.
    
 0.997
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.981
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.962
LOC101073138
Uncharacterized protein.
  
  
0.942
LOC101064444
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.901
traf2
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.901
LOC101075779
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.901
LOC101080086
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
    
 0.859
LOC101071795
Baculoviral IAP repeat containing 7.
   
 0.813
LOC101075537
Baculoviral IAP repeat containing 2.
   
 0.813
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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