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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttll4Tubulin tyrosine ligase-like family, member 4. (567 aa)    
Predicted Functional Partners:
bend5
ATP/GTP binding protein-like 4.
   
 
 0.649
ttll12
Tubulin tyrosine ligase-like family, member 12.
      
0.580
ttl
Tubulin tyrosine ligase.
   
  
0.572
ENSTRUP00000054854
Uncharacterized protein.
   
  
0.569
agtpbp1
ATP/GTP binding protein 1.
   
 
 0.526
usp38
Ubiquitin specific peptidase 38; Belongs to the peptidase C19 family.
      
 0.497
LOC101078395
Immunoglobulin superfamily, DCC subclass, member 4.
      
 0.497
agbl2
ATP/GTP binding protein-like 2.
   
 
 0.473
ENSTRUP00000064227
LOW QUALITY PROTEIN: cytosolic carboxypeptidase 2.
   
 
 0.473
ttll1
Tubulin tyrosine ligase-like family, member 1.
   
  
0.414
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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