Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ttll4Tubulin tyrosine ligase-like family, member 4. (567 aa)    
Predicted Functional Partners:
agtpbp1
ATP/GTP binding protein 1.
    
 
 0.791
bend5
ATP/GTP binding protein-like 4.
    
 
 0.763
LOC101078395
Immunoglobulin superfamily, DCC subclass, member 4.
      
 0.697
ENSTRUP00000054854
Uncharacterized protein.
   
  
 0.661
agbl2
ATP/GTP binding protein-like 2.
    
 
 0.640
ENSTRUP00000064227
LOW QUALITY PROTEIN: cytosolic carboxypeptidase 2.
    
 
 0.640
agbl5
ATP/GTP binding protein-like 5.
    
 
 0.610
zfand2a
Zinc finger, AN1-type domain 2A.
      
 0.599
usp38
Ubiquitin specific peptidase 38; Belongs to the peptidase C19 family.
      
 0.596
ttll12
Tubulin tyrosine ligase-like family, member 12.
      
 0.594
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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