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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
taf1bTATA box binding protein (Tbp)-associated factor, RNA polymerase I, B. (550 aa)    
Predicted Functional Partners:
gcna
Acidic repeat-containing protein.
   
 0.909
hint1
Histidine triad nucleotide binding protein 1.
    
 0.825
ENSTRUP00000052083
Uncharacterized protein.
    
 0.825
LOC101073709
Histidine triad nucleotide binding protein 2.
    
 0.825
tbp
TATA box binding protein.
    
 0.823
trf3
TATA box-binding protein-like protein 2; TATA box-binding transcription factor. Members of the TBP family are differentially required to regulate transcription and development during early embryogenesis (By similarity).
    
 0.823
rrn3
RRN3 homolog, RNA polymerase I transcription factor.
    
 0.754
LOC101071820
Glyoxalase domain containing 5.
    
 0.679
GLOD5
Glyoxalase domain containing 5.
    
 0.679
ENSTRUP00000081099
annotation not available
    
 0.679
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.