STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
taf1bTATA box binding protein (Tbp)-associated factor, RNA polymerase I, B. (550 aa)    
Predicted Functional Partners:
tbp
TATA box binding protein.
    
 0.948
trf3
TATA box-binding protein-like protein 2; TATA box-binding transcription factor. Members of the TBP family are differentially required to regulate transcription and development during early embryogenesis (By similarity).
    
 0.948
gcna
Acidic repeat-containing protein.
   
 0.914
hint1
Histidine triad nucleotide binding protein 1.
    
 0.905
ENSTRUP00000052083
Uncharacterized protein.
    
 0.905
LOC101073709
Histidine triad nucleotide binding protein 2.
    
 0.905
rrn3
RRN3 homolog, RNA polymerase I transcription factor.
    
 0.885
eaf1
ELL associated factor 1.
    
   0.859
ubtf
Upstream binding transcription factor.
   
 0.830
LOC101062941
Upstream binding transcription factor, like.
   
 0.790
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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