STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chst11Carbohydrate sulfotransferase. (439 aa)    
Predicted Functional Partners:
pigb
Mannosyltransferase.
   
  
 0.742
xrcc3
DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily.
      
 0.654
LOC101070102
Myeloid associated differentiation marker.
   
  
 0.641
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
      
 0.626
ddb2
Damage-specific DNA binding protein 2.
      
 0.609
cop1
COP1 E3 ubiquitin ligase.
      
 0.566
LOC101063377
Decorin; May affect the rate of fibrils formation.
     
 0.534
H2T1L2_TAKRU
Glycoprotein IX (platelet).
     
 0.485
H2S2Y1_TAKRU
Versican a.
     
 0.469
LOC101067880
Brevican.
     
 0.462
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.