LOC101073201 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101073201

TUB like protein 4b; Belongs to the TUB family. (1815 aa)

Predicted Functional Partners:

cul5

0.649

cand1

0.592

rnf7

0.585

eprs1

0.566

RIMS2

0.566

kcne4

0.497

serac1

0.491

Tmem242

0.474

LOC101070508

0.471

LOC101068670

0.471

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101068670	LOC101070508	ENSTRUP00000049263	ENSTRUP00000019715	Ubiquitin-like domain-containing protein.	Elongin-B isoform X1.	0.901
LOC101068670	LOC101073201	ENSTRUP00000049263	ENSTRUP00000019872	Ubiquitin-like domain-containing protein.	TUB like protein 4b; Belongs to the TUB family.	0.471
LOC101068670	cand1	ENSTRUP00000049263	ENSTRUP00000014446	Ubiquitin-like domain-containing protein.	Cullin-associated and neddylation-dissociated 1.	0.768
LOC101068670	cul5	ENSTRUP00000049263	ENSTRUP00000027440	Ubiquitin-like domain-containing protein.	Cullin 5a; Belongs to the cullin family.	0.969
LOC101068670	rnf7	ENSTRUP00000049263	ENSTRUP00000016085	Ubiquitin-like domain-containing protein.	Ring finger protein 7.	0.910
LOC101070508	LOC101068670	ENSTRUP00000019715	ENSTRUP00000049263	Elongin-B isoform X1.	Ubiquitin-like domain-containing protein.	0.901
LOC101070508	LOC101073201	ENSTRUP00000019715	ENSTRUP00000019872	Elongin-B isoform X1.	TUB like protein 4b; Belongs to the TUB family.	0.471
LOC101070508	cand1	ENSTRUP00000019715	ENSTRUP00000014446	Elongin-B isoform X1.	Cullin-associated and neddylation-dissociated 1.	0.768
LOC101070508	cul5	ENSTRUP00000019715	ENSTRUP00000027440	Elongin-B isoform X1.	Cullin 5a; Belongs to the cullin family.	0.969
LOC101070508	rnf7	ENSTRUP00000019715	ENSTRUP00000016085	Elongin-B isoform X1.	Ring finger protein 7.	0.910
LOC101073201	LOC101068670	ENSTRUP00000019872	ENSTRUP00000049263	TUB like protein 4b; Belongs to the TUB family.	Ubiquitin-like domain-containing protein.	0.471
LOC101073201	LOC101070508	ENSTRUP00000019872	ENSTRUP00000019715	TUB like protein 4b; Belongs to the TUB family.	Elongin-B isoform X1.	0.471
LOC101073201	RIMS2	ENSTRUP00000019872	ENSTRUP00000070576	TUB like protein 4b; Belongs to the TUB family.	Regulating synaptic membrane exocytosis 2.	0.566
LOC101073201	Tmem242	ENSTRUP00000019872	ENSTRUP00000060324	TUB like protein 4b; Belongs to the TUB family.	Transmembrane protein 242 isoform X1.	0.474
LOC101073201	cand1	ENSTRUP00000019872	ENSTRUP00000014446	TUB like protein 4b; Belongs to the TUB family.	Cullin-associated and neddylation-dissociated 1.	0.592
LOC101073201	cul5	ENSTRUP00000019872	ENSTRUP00000027440	TUB like protein 4b; Belongs to the TUB family.	Cullin 5a; Belongs to the cullin family.	0.649
LOC101073201	eprs1	ENSTRUP00000019872	ENSTRUP00000016942	TUB like protein 4b; Belongs to the TUB family.	Glutamyl-prolyl-tRNA synthetase.	0.566
LOC101073201	kcne4	ENSTRUP00000019872	ENSTRUP00000025535	TUB like protein 4b; Belongs to the TUB family.	Potassium voltage-gated channel, Isk-related family, member 4.	0.497
LOC101073201	rnf7	ENSTRUP00000019872	ENSTRUP00000016085	TUB like protein 4b; Belongs to the TUB family.	Ring finger protein 7.	0.585
LOC101073201	serac1	ENSTRUP00000019872	ENSTRUP00000046451	TUB like protein 4b; Belongs to the TUB family.	Serine active site containing 1.	0.491