Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101073201TUB like protein 4b; Belongs to the TUB family. (1815 aa)    
Predicted Functional Partners:
cul5
Cullin 5a; Belongs to the cullin family.
    
  0.828
rnf7
Ring finger protein 7.
    
  0.780
kcne4
Potassium voltage-gated channel, Isk-related family, member 4.
      
 0.701
serac1
Serine active site containing 1.
      
 0.654
LOC101070508
Elongin-B isoform X1.
    
  0.653
LOC101068670
Ubiquitin-like domain-containing protein.
    
  0.653
Tmem242
Transmembrane protein 242 isoform X1.
      
 0.640
atpsckmt
FATP synthase c subunit lysine N-methyltransferase.
      
 0.602
LOC115248454
RING-box protein 1.
    
  0.601
LOC101079814
Ring-box 1, E3 ubiquitin protein ligase.
    
  0.601
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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