STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
skp1S-phase kinase-associated protein 1; Belongs to the SKP1 family. (163 aa)    
Predicted Functional Partners:
LOC101061529
Zgc:158376.
   
 0.999
LOC101071235
Lysine (K)-specific demethylase 2Ba.
   
 0.999
LOC101063174
Lysine (K)-specific demethylase 2Aa.
   
 0.999
LOC101075964
Lysine (K)-specific demethylase 2Bb.
   
 0.999
kdm2a
Lysine (K)-specific demethylase 2Ab.
   
 0.999
cul3
Cullin 3a; Belongs to the cullin family.
   
 0.998
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
   
 0.998
LOC115248454
RING-box protein 1.
   
 0.997
LOC101079814
Ring-box 1, E3 ubiquitin protein ligase.
   
 0.997
fbxw11
F-box and WD repeat domain containing 11b.
    
 0.988
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.