STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101063365Uncharacterized protein. (592 aa)    
Predicted Functional Partners:
msto1
Misato mitochondrial distribution and morphology regulator 1.
    
 
 0.546
pea15
Proliferation and apoptosis adaptor protein 15.
    
 0.499
LOC101065826
Plac8 onzin related protein 2.
    
 0.481
ENSTRUP00000059693
annotation not available
    
 0.481
smdt1
Single-pass membrane protein with aspartate-rich tail 1a.
      
 0.452
smdt1-2
Single-pass membrane protein with aspartate-rich tail 1b.
      
 0.452
ENSTRUP00000051515
Fibronectin type-III domain-containing protein.
    
 0.448
H2U2U9_TAKRU
VWFA domain-containing protein.
    
 0.448
LOC101069151
Si:ch211-102l7.3; Belongs to the peptidase S1 family.
    
 0.428
pamr1
Uncharacterized protein; Belongs to the peptidase S1 family.
    
 0.428
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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