STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2T5L7_TAKRUUncharacterized protein. (229 aa)    
Predicted Functional Partners:
micu1
Mitochondrial calcium uptake 1.
   
 0.536
LOC101061287
Ras-related GTP binding A.
    
 
 0.533
smdt1
Single-pass membrane protein with aspartate-rich tail 1a.
    
 0.494
smdt1-2
Single-pass membrane protein with aspartate-rich tail 1b.
    
 0.494
MCUB
Mitochondrial calcium uniporter dominant negative beta subunit.
    
 0.493
mcu
Mitochondrial calcium uniporter.
    
 0.493
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.