STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101062057Histone PARylation factor 1. (351 aa)    
Predicted Functional Partners:
parp2
Poly [ADP-ribose] polymerase.
    
 
 0.887
parp1
Poly [ADP-ribose] polymerase.
    
 
 0.884
cwc22
CWC22 spliceosome associated protein homolog.
      
 0.696
gmppb
GDP-mannose pyrophosphorylase B.
   
   0.645
exosc8
Exosome component 8.
   
  
 0.628
adprhl2
ADP-ribosylhydrolase like 2.
      
 0.623
snrpb
Small nuclear ribonucleoprotein-associated protein.
      
 0.613
LOC101079537
Synaptotagmin Ia.
      
 0.609
parp3
Poly [ADP-ribose] polymerase.
    
 
 0.585
ENSTRUP00000075448
Poly (ADP-ribose) polymerase family, member 3.
    
 
 0.585
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.