STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl38Mitochondrial ribosomal protein L38. (386 aa)    
Predicted Functional Partners:
mrpl40
Mitochondrial ribosomal protein L40.
   
 
 0.927
mrpl58
Mitochondrial ribosomal protein L58.
   
 
 0.921
mrpl52
Mitochondrial ribosomal protein L52.
   
 
 0.907
mrpl16
Mitochondrial ribosomal protein L16.
   
 
 0.901
mrpl46
Mitochondrial ribosomal protein L46.
   
 
 0.896
mrpl48
Mitochondrial ribosomal protein L48.
   
 
 0.884
mrpl18
Mitochondrial ribosomal protein L18.
   
   0.882
mrpl10
Mitochondrial ribosomal protein L10.
   
 
 0.871
mrpl4
Mitochondrial ribosomal protein L4.
   
 
 0.869
dap3
Death associated protein 3.
   
 
 0.866
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.