Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bms1BMS1 ribosome biogenesis factor. (1175 aa)    
Predicted Functional Partners:
rcl1
RNA terminal phosphate cyclase-like 1.
   
 0.999
nop14
NOP14 nucleolar protein homolog (yeast).
   
 0.997
heatr1
BP28CT domain-containing protein.
   
 0.997
wdr3
WD repeat domain 3.
   
 0.996
utp20
UTP20 small subunit processome component.
   
 0.996
nat10
N-acetyltransferase 10.
   
 0.996
utp18
UTP18 small subunit processome component.
   
 0.996
mphosph10
U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.
   
 0.996
nol10
Nucleolar protein 10.
   
 0.996
wdr46
WD repeat domain 46.
   
 0.995
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.