Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ntng1Netrin g1a. (542 aa)    
Predicted Functional Partners:
LOC101061118
Leucine rich repeat containing 4C, genome duplicate a.
   
 0.962
LOC101071141
Leucine rich repeat containing 4C, genome duplicate b.
   
 0.958
H2U447_TAKRU
Vav 3 guanine nucleotide exchange factor b.
  
  
 
0.901
lrit3
Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.
    
 0.713
LOC101074032
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.
    
 0.709
LRIT1
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.
    
 0.709
ENSTRUP00000071066
annotation not available
    
 0.709
ENSTRUP00000075362
Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3.
    
 0.709
ENSTRUP00000085499
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.
    
 0.709
neo1
Neogenin 1b.
    
 0.649
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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