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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc31a1Solute carrier family 31 member 1. (199 aa)    
Predicted Functional Partners:
atp7a
ATPase copper transporting alpha.
    
 
 0.603
Atox1
HMA domain-containing protein.
      
 0.568
slc30a1
Uncharacterized protein.
      
 0.561
ENSTRUP00000049598
Cytochrome c oxidase copper chaperone COX17.
   
  
 0.553
ccs
Copper chaperone for superoxide dismutase.
    
 
 0.536
LOC101071475
Cytochrome c oxidase assembly homolog 11 (yeast).
      
 0.434
SLC39A11
Solute carrier family 39 member 11.
   
  
 0.417
lclat1
Lysocardiolipin acyltransferase 1.
   
 
 0.405
LOC101074335
Cytochrome b561.
      
 0.402
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.