STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101061371LHFPL tetraspan subfamily member 5a. (216 aa)    
Predicted Functional Partners:
LOC101065727
Protocadherin-related 15b.
   
 0.683
tmie
Transmembrane inner ear.
     
 0.675
LOC101075306
Cadherin-related family member 5-like isoform X1.
   
 0.635
LOC115252027
Cadherin-related family member 5-like.
   
 0.635
tmc2
Transmembrane channel-like protein.
   
 0.620
cib3
Calcium and integrin binding family member 3.
     
 0.592
cib2
Calcium and integrin binding family member 2.
     
 0.592
GGT7
Gamma-glutamyltransferase 7.
   
   0.581
H2V7V0_TAKRU
Uncharacterized protein.
    
 0.536
ENSTRUP00000081628
Transmembrane channel-like protein.
   
 0.530
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.