Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101074969Mannose receptor, C type 1b. (1422 aa)    
Predicted Functional Partners:
LOC101067363
Protein phosphatase 6, regulatory subunit 2a.
      
 0.700
hpdl
4-hydroxyphenylpyruvate dioxygenase.
      
 0.576
tnr
Tenascin R (restrictin, janusin).
   
  0.515
LOC101068097
Tenascin C.
   
  0.515
Tnc
Fibronectin type-III domain-containing protein.
    
  0.512
Tnn
Fibronectin type-III domain-containing protein.
    
  0.512
AKR1D1
Aldo-keto reductase family 1 member D1.
    
 
 0.452
LOC101073681
FXYD domain-containing ion transport regulator; Belongs to the FXYD family.
      
 0.431
stk39
Serine threonine kinase 39.
      
 0.431
ADAMTS5
ADAM metallopeptidase with thrombospondin type 1 motif 5.
    
 0.407
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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