STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101079401Transcription factor 3a. (618 aa)    
Predicted Functional Partners:
LOC101065935
T-cell acute lymphocytic leukemia protein 1; Transcription factor that plays a pivotal role in hemopoietic and endothelial development.
   
 0.764
ENSTRUP00000081256
T-cell acute lymphocytic leukemia protein 1.
   
 0.764
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.761
myf5
Myogenic factor.
   
 0.693
Myod2
Myogenic factor.
   
 0.693
myod
Myoblast determination protein 1 homolog; May act as a transcriptional activator that promotes transcription of muscle-specific target genes and plays a role in muscle differentiation.
   
 0.693
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.692
myog
Myogenin.
   
 0.687
Fash1
Achaete-scute family bHLH transcription factor 1b.
   
 0.686
ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 0.686
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.