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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101063922Zgc:55262; Belongs to the peptidase C2 family. (786 aa)    
Predicted Functional Partners:
LOC101067511
Zgc:153993.
   
 
 0.901
bax
BCL2 associated X, apoptosis regulator a.
     
  0.900
LOC101069964
Uncharacterized protein.
     
  0.900
H2UMK9_TAKRU
Uncharacterized protein.
   
 0.694
LOC101068021
Calpain, small subunit 1 b.
   
0.677
CAPNS1
Calpain small subunit 1.
   
0.677
LOC101077791
Uncharacterized protein.
   
 
  0.563
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
   
 
 0.493
psmb4
Proteasome subunit beta; Belongs to the peptidase T1B family.
      
 0.478
CTSD1
Cathepsin D1; Belongs to the peptidase A1 family.
   
  
 0.474
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.