STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101063922Zgc:55262; Belongs to the peptidase C2 family. (786 aa)    
Predicted Functional Partners:
H2UMK9_TAKRU
Uncharacterized protein.
   
 0.823
LOC101068021
Calpain, small subunit 1 b.
   
 0.697
CAPNS1
Calpain small subunit 1.
   
 0.697
LOC101067511
Zgc:153993.
   
 
 0.660
bax
BCL2 associated X, apoptosis regulator a.
     
 0.656
LOC101069964
Uncharacterized protein.
     
 0.656
LOC101070919
Cathepsin Bb; Belongs to the peptidase C1 family.
    
 
 0.532
LOC101076659
Cathepsin Ba; Belongs to the peptidase C1 family.
    
 
 0.494
ptpn1
Tyrosine-protein phosphatase non-receptor type.
   
 
 0.422
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.