Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101074207SRSF protein kinase 1b. (504 aa)    
Predicted Functional Partners:
prpf38a
Pre-mRNA processing factor 38A.
    
 
 0.667
zrsr2
U2 small nuclear ribonucleoprotein auxiliary factor subunit-related protein.
    
 
 0.660
clk4
CDC-like kinase 4a.
   
 
0.659
srsf1
Serine and arginine rich splicing factor 1a.
    
 
 0.651
LOC101066595
Uncharacterized protein.
    
 
 0.651
snrnp27
SNRNP27 domain-containing protein.
    
 
 0.642
rbm39
RNA binding motif protein 39b.
    
 
 0.635
ENSTRUP00000056044
Uncharacterized protein.
    
 
 0.635
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
   0.624
H2SWV4_TAKRU
RRM domain-containing protein.
    
 
 0.618
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: medium (44%) [HD]