STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101074207SRSF protein kinase 1b. (504 aa)    
Predicted Functional Partners:
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
   0.677
H2SWV4_TAKRU
RRM domain-containing protein.
    
 
 0.609
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.609
srsf5
Serine and arginine rich splicing factor 5a.
    
 
 0.571
SRSF4
Serine and arginine rich splicing factor 4.
    
 
 0.571
ENSTRUP00000030062
Serine/arginine-rich splicing factor 4-like isoform X3.
    
 
 0.571
LOC101079760
Serine and arginine rich splicing factor 5b.
    
 
 0.571
H2S5D4_TAKRU
RRM domain-containing protein.
    
 
 0.571
ENSTRUP00000088135
Uncharacterized protein.
    
 
 0.558
clk4
CDC-like kinase 4a.
    
 
0.553
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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