STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101077845Ubiquitin specific peptidase 43b; Belongs to the peptidase C19 family. (1184 aa)    
Predicted Functional Partners:
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.747
usp10
Ubiquitin carboxyl-terminal hydrolase.
    
 0.698
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.677
rps27a
Ribosomal protein S27a.
    
 0.639
rfc4
Replication factor C (activator 1) 4.
   
 0.617
usp14
Ubiquitin carboxyl-terminal hydrolase.
    
 
 0.604
polh
Polymerase (DNA directed), eta.
   
 
 0.597
rfc5
Replication factor C (activator 1) 5.
    
 0.593
rfc2
Replication factor C (activator 1) 2.
    
 0.568
mrpl3
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.568
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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