Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101079840Protocadherin 1a. (1191 aa)    
Predicted Functional Partners:
PCDH20
Protocadherin 20.
   
  0.602
LOC101067940
Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family.
      
 0.545
fbxw11
F-box and WD repeat domain containing 11b.
      
 0.545
LOC101078933
G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.
      
 0.540
aplp2
Amyloid beta (A4) precursor-like protein 2.
    
  0.480
LOC101075584
Integrin beta; Belongs to the integrin beta chain family.
    
 0.470
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.470
rest
NRSF/REST.
      
 0.437
depdc1
DEP domain containing 1a.
     
 0.426
daam1
Dishevelled associated activator of morphogenesis 1b.
    
  0.426
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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