STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101079840Protocadherin 1a. (1191 aa)    
Predicted Functional Partners:
fbxw11
F-box and WD repeat domain containing 11b.
      
 0.520
LOC101067940
Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family.
   
  
 0.467
LOC101078933
G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.
     
 0.454
LOC101062065
Zgc:110783.
    
  0.446
rest
NRSF/REST.
     
 0.430
depdc1
DEP domain containing 1a.
     
 0.427
cyfip1
Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.
    
 0.410
LOC101069918
Citron Rho-interacting kinase; Plays a role in cytokinesis. Displays serine/threonine protein kinase activity; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.
    
  0.404
aplp2
Amyloid beta (A4) precursor-like protein 2.
    
  0.402
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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