STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sap18Sin3A-associated protein. (153 aa)    
Predicted Functional Partners:
pnn
Pinin, desmosome associated protein.
    
 0.997
sap30l
Sap30-like.
    
 0.987
rnps1
RNA binding protein S1, serine-rich domain.
   
 0.986
LOC101074911
RNA-binding protein with serine-rich domain 1-B-like isoform X1.
   
 0.986
LOC101074452
Mago homolog, exon junction complex subunit.
   
 0.981
suds3
SDS3 homolog, SIN3A corepressor complex component.
    
 0.979
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.974
LOC101074005
Apoptotic chromatin condensation inducer 1b.
   
 0.973
LOC101061384
SAP domain-containing protein.
   
 0.973
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.948
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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