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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zmat2Zinc finger, matrin-type 2. (201 aa)    
Predicted Functional Partners:
mfap1
Microfibril associated protein 1.
   
 0.996
SART1
Squamous cell carcinoma antigen recognised by cytotoxic T lymphocytes.
    
 0.990
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 
 0.987
TCERG1
Transcription elongation regulator 1.
    
  0.986
prpf38a
Pre-mRNA processing factor 38A.
   
 0.984
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.977
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.959
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
   
 0.946
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 
 0.941
lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.939
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.